Volume 20, Number 4—April 2014
Research
Novel Betacoronavirus in Dromedaries of the Middle East, 2013
Table 3
Putative transcription regulatory sequence of betacoronavirus A1 members*
ORF | Putative transcription regulatory sequence (distance, in bases, to AUG)�? |
|||||||
---|---|---|---|---|---|---|---|---|
DcCoV UAE-HKU23 | BCoV | CRCoV | SACoV | GiCoV | PHEV | HCoV-OC43 | ECoV | |
1ab | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) | UCUAAAC (140) |
NS2 | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (1) | UCUAAAC (7) | UCUAAAA (12) |
HE | ACUAAAC (9) | ACUAAAC (9) | ACUAAAC (9) | ACUAAAC (9) | ACUAAAC (9) | ACUAAAC (9) | AUUAAAC (9) | UCUAAAC (9) |
S | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) | UCUAAAC (0) |
NS5 | GGUGAAC (51) | GGUAGAC (50) | GGUAGAC (51) | GGUAGAC (50) | GGUAGAC (50) | UUAAGCA (32) | UCUAGCA (20/32) | UAUACUUUAUAA (41) |
E | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) | UCCAAAC (123) |
M | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) | UCCAAAC (3) |
N | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAC (7) | UCUAAAU (7) | UCUAAAC (7) |
*ORF, open reading frame; DcCoV, dromedary camel coronavirus; BCoV, bovine CoV; CRCoV, canine respiratory CoV; SACoV, sable antelopeCoV; GiCoV, giraffe CoV; PHEV, porcine hemagglutinating encephalomyelitis virus; HCoV, human CoV; ECoV, equine CoV; NS, nonstructural protein; HE, hemagglutinin esterase; S, spike protein; E, envelope protein; M, membrane protein; N, nucleocapsid protein.�?"�? Boldface indicates bases and distances to AUG that are different from those for DcCoV UAE-HKU23.
1These authors contributed equally to this article.