Volume 21, Number 1—January 2015
Dispatch
Streptococcus equi subsp. zooepidemicus Infections Associated with Guinea Pigs
Table
Allele* | Length, bp | Closest GenBank overall species match (% identity/overlap)† | Next best GenBank matches (% identity/overlap)† |
---|---|---|---|
arcC27 | 437 | S. equi subsp. zooepidemicus strains CY, ATCC35246 (100%/437 bp); H70 (99%/437 bp); MHCS10565 (97%/437 bp) | S. equi subsp. equi strain 4047 (97%/437 bp) |
nrdE19 | 448 | S. equi subsp. zooepidemicus strains CY, ATCC35246, MGCS10565 (99%/448 bp); H70 (97%/448 bp) | S. equi subsp. equi strain 4047 (94%/448 bp); S. thermophilus ASCC1275,JIM8232,ND03, 5 others (80%/447 bp) |
spi45 | 459 | S. equi subsp. zooepidemicus strains CY, ATCC35246,4047 (100%/459 bp); MGCS10565 (99%/459 bp); H70 (94%/459 bp) | S. dysgalactiae subsp. equisimilis strains ATCC12394, 167, AC2713, RE378, GGS124 (72%/447 bp) |
tdk1 | 370 | S. equi subsp. zooepidemicus strains CY, 636199–1A, 65843, ATCC35246, H70 (100%/370 bp); 15 others (99%/370 bp) | S. equi subsp. equi strain 4047 (99%/370bp); S. equi subsp. zooepidemicus 10 strains (96%–98%/369 bp) |
tpi34 | 424 | S. equi subsp. zooepidemicus strains CY, 14580–1A, 44464, ATCC35246 (100%/424bp); 22 others (99%/424 bp); 27 others (95%–97%/424 bp) | S. equi subsp. equi strain 4047 (97%/424 bp); S. pyogenes 20 strains (82%/422 bp) |
yqiL46 | 396 | S. equi subsp. zooepidemicus strains CY, ATCC35246 (100%/396 bp); >30 strains (99%/396 bp); >20 strains (95%–98%/396 bp) | S. equi subsp. equi strain 4047 (97%/424 bp); S. pyogenes MGAS6180 (70%/422 bp) |
*All 4 isolates shared the identical arcC27, nrdE19, spi45, tdk1, tpi34, yqiL46 alleles; sequences provided at http://pubmlst.org/szooepidemicus.
†Searches performed at http://blast.ncbi.nlm.nih.gov/Blast.cgi
Page created: December 19, 2014
Page updated: December 19, 2014
Page reviewed: December 19, 2014
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.