Volume 21, Number 2—February 2015
Dispatch
Influenza D Virus in Cattle, France, 2011–2014
Table 2
Primer sets used for PCR amplification and sequencing of the full genome of D/bovine/France/2986/2012
Gene |
Forward primer, 5′ → 3′ |
Reverse primer, 5′ → 3′ |
---|---|---|
Hemagglutinin-esterase | FluD_HE-1F: AGCATAAGCAGGAGATTTTCAAAG | FluD_HE-745R: GCACTACATGCTTGTTGC |
FluD_HE-667F: GTTTGTGGGACTGAGCAATC | FluD_HE-1350R: CCCTGCTTGCGGTATTATC | |
FluD_HE-1267F: CCCAAGTATGGCAGATG | fluD_HE-2042R: GCAAGGAGATTTTTTCTAAGATT | |
Matrix | FluD-MP-8F: GCAGAGGATATTTTTGACGC | FluD-MP-670R: CCCATATGCTATTCTTGCCAG |
FluD-MP-602F: AAAAAAGAGGCCCAGGCAC | FluD-MP-1212R: GCAAGAGGATTTTTTCGCG | |
Nucleoprotein | FluD-NP-1F: GGCATAAGCAGGAGATTATTAAGC | FluD-NP-949R: TAAAGGCTCTTACTCCAGAATA |
FluD-NP-849F: GCCTTGGTCAATGTGGCTG | FluD-NP-1717R: GGGGACTGCAACAGAACCA | |
Nonstructural protein | FluD-NS-8F: GCAGGGGTGTACAATTTCAAT | FluD-NS-804R: TCGAAACTGACTTGATTTCATCC |
Polymerase 3 | FluD-P3–1F: GGCATAAGCAGGAGATTTA | FluD-P3–759R: TTTTCTTCTAGATGTTCCAGTTTGA |
FluD-P3–677F: AAAAGAAATCAGGCTGAATGC | FluD-P3–1467R: CCAAACAAACAGTCAGTTGA | |
FluD-P3–1394F: CCCGGAAAGGTCAAGATAG | FluD-P3–2184R: GGAGATTTTTAACATTACAAGGCC | |
Polymerase basic 1 | FluD-PB1–1F: GGCATAAGCAGAGGATTTTAT | FluD-PB1–736R: TTTTCCTCTTTCTCCGTC |
FluD-PB1–631F: AAAAATGAAGTCTCCAACATTG | C/OK-Rev (2) | |
C/OK-Fwd (2) | FluD-PB1–2317R: GATTTTTCTGTTATTAAACAACGC | |
Polymerase basic 2 | FluD-PB2–1F: GGCATAAGCAGAGGATGTC | FluD-PB2–882R: CCCTTATCTTCTCTGCTGG |
FluD-PB2–796F: AAAAGAAGAGAGATGTTAGAGC | FluD-PB2–1776R: TTTTACCCATTATCAAAGCAGG | |
FluD-PB2–1724F: GAAAGAATAAACACTGATGATG | FluD-PB2–2353R: GAGGATTTTTTCAATGTGCTTC |