Volume 21, Number 5—May 2015
Research
Molecular Epidemiology of Plasmodium falciparum Malaria Outbreak, Tumbes, Peru, 2010–2012
Table 1
Code | Collection Date | Isolation area | Genetic lineage | Chromosome location, locus name |
||||||
---|---|---|---|---|---|---|---|---|---|---|
6 |
4 |
7 |
6 |
10 |
2 |
3 |
||||
TA1 | Polyα | PfPK2 | TA109 | 2490 | C2M34 | C3M69 | ||||
MIS 0760 | 2010 Oct 25 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS 0761 | 201 Oct 26 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS 1142 | 2011 Mar 31 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS 1147 | 2011 Jul 19 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS 1146 | 2011 Jul 26 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS 1168 | 2011 Aug 19 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS1280 | 2011 Aug 27 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
TI-435 | 2011 Sep 22 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
TIA-4156 | 2011 Sep 28 | Tumbes | BV1 | 169 | 183 | 172 | 164 | 84 | 232 | 134 |
T3–861 | 2011 Oct 4 | Tumbes | BV1 | 169 | 183 | 169 | 164 | 84 | 232 | 134 |
TIA-4333 | 2011 Oct 14 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
MIS1278 | 2011 Nov 1 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
T3–989 | 2011 Nov 18 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
M01L1615 | 2011 Dec 1 | Tumbes | BV1 | 169 | 183 | 172 | 164 | 84 | 232 | 134 |
TIA-434 | 2011 Dec 1 | Tumbes | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
PSSI-205 | 2011 Dec 27 | Corrales | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
Z1–22 | 2012 Mar 14 | Zarumilla | BV1 | 172 | 183 | ND | 164 | 84 | 232 | 134 |
PR-12† | Dec 2009 | Requena (C) | BV1 | 172 | 183 | 172 | 164 | 84 | 232 | 134 |
PY013† | Mar 2010 | Yurimaguas (E) | BV1 | 172 | 183 | 172 | 160 | 84 | 232 | 134 |
Clonet B† | 1999–2000 | Loreto (E) | B | 172 | 183 | 172 | 164 | 84 | 226 | 149 |
Clonet A† | 1999–2000 | Loreto (E) | A | 169 | 172 | 166 | 164 | 84 | 240 | 132 |
Clonet C† | 1999–2000 | Loreto (E, W) | C | 178 | 164 | 163 | 160 | 80 | 246 | 136 |
Clonet D† | 1999–2000 | Loreto (E, W) | D | 178 | 161 | 175 | 160 | 80 | 233 | 122 |
Clonet E† | 1999–2000 | Tumbes | E | 172 | 148 | 175 | 160 | 74 | 226 | 138 |
*Microsatellite genotypes of all 11 isolates from Requena and 1 of 12 isolates from Yurimaguas were identical to those of the Tumbes outbreak. Only 17 of 54 isolates processed are shown. Isolates were selected to cover the extent of the duration of the outbreak (October 2010–March 2012). ND, not determined.
†Historical microsatellite alleles of clonets A–E found in Peru in 1999–2000 and the BV1 variant found in Loreto in 2009–2010. C, Central Amazon; E, eastern Amazon; W, western Amazon.
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