Volume 27, Number 12—December 2021
Research
Mammarenaviruses of Rodents, South Africa and Zimbabwe
Antoinette A. Grobbelaar, Jocelyn Jardine1, Felicity J. Burt2, Alasdair J. Shepherd, Susan P. Shepherd, Patricia A. Leman, Alan Kemp, Lawrence E.O. Braack3, Jacqueline Weyer
, Janusz T. Paweska, and Robert Swanepoel3
, Janusz T. Paweska, and Robert Swanepoel3
Table 1
Origins of viruses and nucleotide sequences used in serologic and phylogenetic studies of mammarenaviruses of rodents, South Africa and Zimbabwe*
| Virus isolate | Source | Location | Obtained from | Latitude† | Longitude† | GenBank accession no.‡ |
|---|---|---|---|---|---|---|
| Mopeia SPU84/491/40 | Mastomys natalensis | Nwaswitshaka, South Africa | This study | −24.875 | 31.625 | KF926396 |
| Mopeia SPU84/491/38 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | Not on tree§ |
| Mopeia SPU84/491/45 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | Not on tree§ |
| Mopeia SPU84/491/74 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | Not on tree§ |
| Mopeia SPU84/491/75 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | Not on tree§ |
| Mopeia SPU84/491/50 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | KF926397 |
| Mopeia SPB801480 | M. natalensis | Kwekwe, Zimbabwe | CDC | KF926400 | ||
| Mopeia SPU84/491/69 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | KF926399 |
| Mopeia SPU84/491/73 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | KF926401 |
| Mopeia SPU84/491/52 | M. natalensis | Nwaswitshaka, South Africa | Isolated in this study | −24.875 | 31.625 | KF926398 |
| Mopeia SPU89/462/61 | M. natalensis | Mahudzi, South Africa | Isolated in this study | −23.875 | 31.625 | KF926405 |
| Mopeia SPU94/088/235 | M. natalensis | Mazithi, South Africa | Isolated in this study | −24.375 | 31.875 | KF926406 |
| Mopeia SPU94/089/38 | M. natalensis | Nhlanganzwani, South Africa | Isolated in this study | −25.125 | 31.875 | KF926404 |
| Mopeia SPU94/089/33 | M. natalensis | Nhlanganzwani, South Africa | Isolated in this study | −25.125 | 31.875 | KF926403 |
| Mopeia SPU82/030/1 | M. natalensis | Flesk, Zimbabwe | Isolated in this study | −20.125 | 30.875 | KF926407 |
| Mopeia AN20410 | M. natalensis | Mopeia, Mozambique | Reisolated in this study | −18.037 | 35.733 | KF926391 |
| Mopeia AN21366 | M. natalensis | Mopeia, Mozambique | Reisolated in this study | −17.808 | 35.733 | KF926395 |
| Mopeia AN20602 | M. natalensis | Mopeia, Mozambique | Reisolated in this study | −18.037 | 35.733 | KF926392 |
| Mopeia AN20615 | M. natalensis | Mopeia, Mozambique | Reisolated in this study | −18.037 | 35.733 | KF926393 |
| Morogoro 3017/2004 | M. natalensis | Magadu, Tanzania | GenBank, sequence only | NA | NA | EU914103 |
| Mopeia SPB801478 | M. natalensis | Chiredzi, Zimbabwe | CDC | NA | NA | KF926402 |
| Mopeia AN20616 | M. natalensis | Mopeia, Mozambique | Reisolated in this study | −18.037 | 35.733 | KF926394 |
| Gairo TZ-27421 | M. natalensis | Tanzania | GenBank, sequence only | NA | NA | KJ855308 |
| Dhati Welel LAV2586 | M. natalensis | Ethiopia | GenBank, sequence only | NA | NA | MT078838 |
| Mobala ACAR 3080 | Praomys jacksoni | Central African Republic | GenBank, sequence only | NA | NA | AY342390 |
| Luna NMW-1 | Aethomys chrysophilus | Zambia | GenBank, sequence only | NA | NA | AB586646 |
| Gbagroube CIV6008 | Mus setulosus | Cote d'Ivoire | GenBank, sequence only | NA | NA | GU830848 |
| Jirandogo JIR76 | Mus baoulei | Ghana | GenBank, sequence only | NA | NA | JX845169 |
| Lassa 391 | Human | Nigeria | GenBank, sequence only | NA | NA | X52400 |
| Lassa Josiah | Human | Sierra Leone | CDC | NA | NA | J04324 |
| Lassa 331 | Human | Sierra Leone | CAMR | NA | NA | KF926390 |
| Menekre CIV1227 | Hylomyscus spp. | Cote d’Ivoire | GenBank, sequence only | NA | NA | GU830862 |
| Solwezi 13ZR68 | Grammomys spp. | Zambia | GenBank, sequence only | NA | NA | AB972428 |
| Ippy DakAnB188d | Arvicanthus spp. | Central African Republic | YARU | NA | NA | DQ328877 |
| Mariental N27 MRMi. N9 | Micaelamys namaquensis | Namibia | GenBank, sequence only | NA | NA | KM272987 |
| Bobomene SPU84/491/106 | A. chrysophilus | Bobomene, South Africa | Isolated in this study | −22.625 | 31.125 | KF926408 |
| Merino Walk SPU85/353 | Otomys unisulcatus | Merino Walk, South Africa | Isolated in this study | −31.125 | 27.625 | KF926409 |
| Okahandja N73 OkhMi.n4 | Micaelamys namaquensis | Namibia | GenBank, sequence only | NA | NA | KM272988 |
| Witsand SPU86/485 | M. namaquensis | Witsand, South Africa | Isolated in this study | −28.625 | 22.375 | KF926412 |
| Bitu ANG0070 | M. namaquensis | Tundavala, Angola | GenBank, sequence only | NA | NA | MZ065539 |
| Omdraaivlei SPU86/415/4 | O. unisulcatus | Omdraaivlei, South Africa | Isolated in this study | −30.125 | 23.125 | KF926410 |
| Omdraaivlei SPU86/415/2 | O. unisulcatus | Omdraaivlei, South Africa | Isolated in this study | −30.125 | 23.125 | KF926411 |
| Souris 05775–5302–5304 | Praomys sp. | Cameroon | GenBank, sequence only | NA | NA | KP050227 |
| Natorduori NAT23 | Mus mattheyi | Ghana | GenBank, sequence only | NA | NA | JX845170 |
| Lunk NKS-1 | Mus minutoides | Zambia | GenBank, sequence only | NA | NA | NC018710 |
| Dandenong 0710–2678 | Human | Australia | GenBank, sequence only | NA | NA | EU136038 |
| LCM WE | Human | New York, USA | GenBank, sequence only | NA | NA | M22017 |
| LCM Armstrong 53 | Human | Missouri, USA | GenBank, sequence only | NA | NA | M20869 |
| Lujo SPU08/308 | Human | Zambia | NICD | NA | NA | FJ952384 |
| Tacaribe 11573 | Artibeus lituratus (bat) | Trinidad | GenBank, sequence only | NA | NA | M20304 |
| Pichinde 3739 | Oryzomys albigularis | Colombia | GenBank, sequence only | NA | NA | K02735 |
| Oliveros 3229–1 | Bolomys obscurus | Argentina | GenBank, sequence only | NA | NA | U34248 |
*CAMR, Center for Applied Microbiology and Research; CDC, US Centers for Disease Control and Prevention; NA, not applicable; NICD, National Institute for Communicable Diseases; USAMRIID, United States Army Research Institute of Infectious Diseases; YARU, Yale Arbovirus Research Unit. †Geographic coordinates are shown for viruses isolated or reisolated from field samples in this study. ‡GenBank accession numbers are shown for partial nucleotide sequences used for phylogenetic analysis in [[ANCHOR###F5###Figure 5###Anchor]]. §Same partial nucleotide sequences as isolate SPU84/491/40.
1Current affiliation: EduVos, Midrand, South Africa.
2Current affiliation: University of the Free State, Bloemfontein, South Africa.
3Current affiliation: University of Pretoria, Pretoria, South Africa.
Page created: October 11, 2021
Page updated: November 19, 2021
Page reviewed: November 19, 2021
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