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Volume 28, Number 9—September 2022

Detection of Endosymbiont Candidatus Midichloria mitochondrii and Tickborne Pathogens in Humans Exposed to Tick Bites, Italy

Giovanni Sgroi1, Roberta Iatta1, Piero Lovreglio, Angela Stufano, Younes Laidoudi, Jairo Alfonso Mendoza-Roldan, Marcos Antonio Bezerra-Santos, Vincenzo Veneziano, Francesco Di Gennaro, Annalisa Saracino, Maria Chironna, Claudio Bandi, and Domenico OtrantoComments to Author 
Author affiliations: University of Bari Aldo Moro, Bari, Italy (G. Sgroi, R. Iatta, P. Lovreglio, A. Stufano, Y. Laidoudi, J.A. Mendoza-Roldan, M.A. Bezerra-Santos, F. Di Gennaro, A. Saracino, M. Chironna, D. Otranto); University of Naples Federico II, Naples, Italy (V. Veneziano); Osservatorio Faunistico Venatorio, Naples (V. Veneziano); University of Milan Statale, Milan, Italy (C. Bandi); Bu-Ali Sina University, Hamedan, Iran (D. Otranto)

Cite This Article


During 2021, we collected blood and serum samples from 135 persons exposed to tick bites in southern Italy. We serologically and molecularly screened for zoonotic tickborne pathogens and only molecularly screened for Candidatus Midichloria mitochondrii. Overall, 62 (45.9%) persons tested positive for tickborne pathogens. Coxiella burnetii was detected most frequently (27.4%), along with Rickettsia spp. (21.5%) and Borrelia spp. (10.4%). We detected Candidatus M. mitochondrii DNA in 46 (34.1%) participants who had statistically significant associations to tickborne pathogens (p<0.0001). Phylogenetic analysis of Candidatus M. mitochondrii sequences revealed 5 clades and 8 human sequence types that correlated with vertebrates, Ixodes spp. ticks, and countries in Europe. These data demonstrated a high circulation of tickborne pathogens and Candidatus M. mitochondrii DNA in persons participating in outdoor activities in southern Italy. Our study shows how coordinated surveillance among patients, clinicians, and veterinarians could inform a One Health approach for monitoring and controlling the circulation of tickborne pathogens.

Hard ticks (Acarina: Ixodidae) represent a major public health issue worldwide and are vectors of a broad range of viruses, bacteria, and parasites of human and veterinary concern (1). Tickborne diseases are increasing globally (2), and several zoonotic tickborne pathogens, such as Coxiella burnetii, Rickettsia spp., and Borrelia burgdorferi sensu lato complex, are emerging or re-emerging in animals and humans (3,4).

Wild animals are increasingly becoming synanthropic, and urbanization of wildlife could bring them into contact with humans, as recently observed during the COVID-19 lockdown in Chile, when sightings of several animal species not previously seen in cities were reported in urban settlements (5). Wildlife movement into areas of human habitation could contribute to higher circulation of ticks, tickborne pathogens, and other zoonotic agents in suburban and rural areas (6). However, because of the scant notifications of tickborne diseases, limited data are available on ticks and tickborne pathogens circulating in human populations (7).

Because Italy is highly suited to outdoor activities such as camping, gardening, hiking, farming, and forestry work, the risk for tick bites among humans is likely high in suburban and rural environments, especially in southern regions where several species of Ixodes ticks have been recorded (7,8). Indeed, high seroprevalences for Rickettsia spp. (8.0%) and B. burgdorferi s.l. complex (7.5%) have been reported in forestry workers, farmers, and livestock breeders in the central-southern regions of Italy (9). Studies focused on humans exposed to tick bites in southern Italy also reported high seroprevalence for C. burnetii (16.0%) and spotted fever group rickettsiae (4.8%) that paralleled molecular detection of the same pathogens in ticks collected from the environment and infested reptiles (4). Those data emphasize the importance of wild animals as reservoirs of tickborne pathogens. Among categories of persons at risk for tickborne pathogen infections, hunters are more likely to be infected than hikers or forestry workers (10); high seroprevalence for Rickettsia spp. was noted in hunters from Germany (9.1%) (11) and Brazil (14.7%) (12). Also, hunting dogs are considered sentinels and reservoirs of several infectious and parasitic agents, including ticks and tickborne pathogens that can be transmitted to animals and humans (8,13). Although several epidemiologic studies have reported circulation of tickborne pathogens in animals and humans worldwide, limited data are available on tick endosymbionts and their role in the transmission of pathogens or clinical onset of tickborne diseases in vertebrate hosts.

For instance, Candidatus Midichloria mitochondrii is an intracellular bacterial endosymbiont of ticks, which is detected inside mitochondria and has high prevalence in the sheep tick, Ixodes ricinus (14). This bacterium is vertically transmitted through generations of I. ricinus ticks, but strong evidence supports its transmission to vertebrate hosts via a blood meal, which has been experimentally reported in rabbits (15). Indeed, high Candidatus M. mitochondrii seroprevalence (58%) has been reported in human patients exposed to I. ricinus tick bites (16) and those affected by Lyme disease (17). Although these results support the idea that Candidatus M. mitochondrii is inoculated into the vertebrate host during the blood meal of the tick, whether this bacterium is involved in tickborne pathogen transmission remains unclear. However, screening studies for Candidatus M. mitochondrii DNA in human blood samples are lacking, even though DNA has been detected in several anthropophilic tick species, such as Rhipicephalus turanicus, Rhipicephalus bursa, and Haemaphysalis punctata (18); in domestic dogs, sheep, and horses (19); in wild roe deer (Capreolus capreolus) (20); and in laboratory rabbits (15).

We aimed to assess the occurrence of zoonotic tickborne pathogens in persons exposed to tick bites and living in suburban and rural areas of southern Italy. In addition, we investigated the presence and the potential involvement of Candidatus M. mitochondrii in tickborne pathogen infections.


Study Area

The study was conducted in 3 regions of southern Italy, Apulia, Basilicata, and Campania, which are surrounded by the Adriatic, Ionian, and Tyrrhenian Seas. These regions are characterized by a typical Mediterranean temperate climate and have progressively continental features including inland and mountainous landscapes.


During February–December 2021, we collected blood and serum samples from 135 persons exposed to tick bites by using 10 mL BD Vacutainer EDTA Blood Collection Tubes and 5 mL BD Vacutainer Serum-separating Tubes (Beckton Dickenson, For each participant, we used a detailed anamnestic form to collect data on patient age, sex, participation in outdoor activities (i.e., hiking, hunting, camping, gardening, farming, or forestry work), geographic origin of tick bite, and post-bite clinical findings ascribable to tickborne diseases. All samples were kept at +4°C in portable refrigerators and delivered to the Departments of Biomedical Science and Human Oncology and Veterinary Medicine, University of Bari (Bari, Italy), for serologic and molecular analyses.

This study was conducted in accordance with ethical principles of the Declaration of Helsinki. Patients provided written informed consent after they were fully informed about the research aims and features. The research was approved by the ethics committee of the University Hospital of Bari Aldo Moro (Italy) (approval no. 6394, protocol no. 0044469-23062020).

Serologic Assays

We screened all serum samples for pathogen-specific IgG by using indirect chemiluminescent immunoassays, Coxiella burnetii VirCLIA IgG, Rickettsia conorii VirCLIA IgG, and Borrelia VirCLIA IgG (Vircell, Results were expressed by antibody concentration index, which we calculated as the ratio between the sample and calibrator relative light units and interpreted according to the manufacturer’s instructions.

The C. burnetii IgG test showed a sensitivity of 90%, specificity of 100%, positive predictive value of 100%, and negative predictive value of 96%. The R. conorii IgG test showed sensitivity of 100%, specificity of 100%, positive predictive value of 100%, and negative predictive value of 100%. The Borrelia IgG test showed sensitivity of 89%, specificity of 98%, positive predictive value of 97%, and negative predictive value of 92%.

DNA Extraction, PCR, and Phylogenetic Analysis

We used the QIAampDNA Blood & Tissue Kit (QIAGEN, to extract DNA from blood samples, according to the manufacturer’s instructions, and tested for tickborne pathogens and Candidatus M. mitochondrii. In all PCR runs, we used sterile water as the negative control and used the following as positive controls: Anaplasma phagocytophilum and Candidatus M. mitochondrii for PCR targeting 16S rRNA gene; C. burnetii for IS1111a and Borrelia lusitaniae for Flagellin from I. ricinus ticks; and Rickettsia raoultii for gltA from a Dermacentor marginatus tick specimen (Table 1) (2124). All ticks used were previously collected from animals or humans in the same study area.

We placed PCR products on 2% agarose gel stained with GelRed Nucleic Acid Gel Stain (Biotium-VWR International, and visualized products on a Gel Logic 100 Digital Imaging System (Kodak, We then purified amplicons and sequenced in both directions by using the same primers we used for PCR and by using the BigDye Terminator v3.1 Cycle Sequencing Kit (Thermo Fisher Scientific, in a 3130 Genetic Analyzer (Applied Biosystems/Thermo Fisher Scientific). We edited and analyzed sequences by using Geneious version 9.0 ( and compared the obtained sequences with available sequences in the GenBank database by using BLAST (

We used MAFFT version 7.490 (25) to align the 16S rRNA gene sequences obtained from human blood samples against 123 available Midichloria genus entries in GenBank, including a sequence type from I. ricinus (accession no. MZ954838) previously found in the study area (8). We then trimmed sequences by using TrimAL version 1.4 revision 15 (26). We split the multisequence alignment (MSA) file into 2 partitions: a reference sequence alignment (RefMSA) containing 1 reference sequence for each sequence type (38 sequences with 202 nucleotide sites) and a query sequence alignment containing the remaining 115 sequences. We created a maximum-likelihood phylogeny on the RefMSA by using IQ-TREE multicore version 1.6.12 (27) under 1,000 ultrafast bootstrap replications (28). We selected the Kimura 3-parameter model with empirical frequencies plus regression (TPM3+F+R2) model in ModelFinder (29), which we implemented as function in the IQ-TREE computation. We used the DNA sequence of Lariskella endosymbiont of Curculio okumai beetles (GenBank accession no. AB746416) as an outgroup. To assess the species diversity among the genus Midichloria, we performed a multi-rate Poisson tree processes on the maximum-likelihood tree by using mPTP version 0.2.4_osx_x86_64 (30). We used an accurate phylogenetic placement based on the least squares method (31) to place the query sequences on the maximum-likelihood tree. In brief, we subjected the maximum-likelihood tree generated by IQ-TREE to branch length correction using FastTree 2 software ( We then used the corrected tree backbone, the RefMSA, and query sequence alignments to generate the phylogenetic placement by using APPLES version 2.0.6 (31). Finally, we used the result of species delimitation and informative alignment to annotate the final tree by using iTOL version 5 (32). We performed Pearson correlation to assess the relationship between phylogenetic clades of Midichloria sequences and their host or isolation source and geographic origin. We performed all analyses on RStudio software (33).

Statistical Analysis

We established exact binomial 95% CI for the prevalence values found. We used a χ2 test to assess statistical differences of prevalence of tickborne pathogens with age, sex, outdoor activity, and geographic origin of tick bite of the enrolled patients. We considered p<0.05 statistically significant. We calculated the odds ratio (OR) to assess the infection risk according to several participant variables. We used a κ value formula to compare serologic and molecular methods and considered risk agreement poor at 0–20%, fair at 21%–40%, moderate at 41%–60%, strong at 61%–80%, and perfect at 81%–100%.

We used Epitools Epidemiologic Calculators software (34) to calculate 95% CI, χ2, p value, OR, and κ values. We used QGIS3 version 3.10.2 with GRASS 7.8.2 (QGIS Project, to map the distribution of participants who were positive for tickborne pathogens and Candidatus M. mitochondrii in the administrative boundaries of the regional study area.


Among 135 participants, 47.4% (64/135) reported having been bitten by ticks in the last year, and 62 (45.9%, 95% CI 37.7%–54.3%) tested positive for >1 tickborne pathogen, 54 (40.0%, 95% CI 32.1%–48.4%) by serologic methods and 20 (14.8%, 95% CI 9.8%–21.8%) by molecular methods. We identified C. burnetii from 37 (27.4%) participants, Rickettsia spp. from 29 (21.5%), and Borrelia spp. from 14 (10.4%). We serologically detected tickborne pathogen co-infections in 14 (10.4%) participants, most of whom had C. burnetiiRickettsia spp. coinfection. We detected co-infection by molecular methods in 1 (0.7%) case-patient who had R. raoultii–B. lusitaniae coinfection.

Nine persons were positive for the same pathogen by both diagnostic tools; 4 were positive for C. burnetii, 4 for R. raoultii, and 1 for B. lusitaniae. We noted strong agreement between serologic and molecular results (κ = 63.0%) (Table 2).

Among the 62 participants who tested positive for tickborne pathogens, 31 (50.0%) reported a localized reaction (i.e., edema and redness) at the tick bite site, among whom 13 (20.6%) displayed >1 clinical sign ascribable to tickborne pathogen infections (Table 3). We noted a statistically significant association between the occurrence of tickborne pathogens and administrative region among patients living in Basilicata, suggesting this area could have higher levels of tickborne pathogens (Table 4).

Figure 1

Distribution of 17 persons in whom Candidatus Midichloria mitochondrii and tickborne pathogens were detected, Italy, 2021. Inset shows region of interest in southern Italy (green shading). APU, Apulia; BAS, Basilicata; B. lusitaniae, Borrelia lusitaniae; CAM, Campania; C. burnetii, Coxiella burnetii; R. raoultii, Rickettsia raoultii.

Figure 1. Distribution of 17 persons in whom Candidatus Midichloria mitochondrii and tickborne pathogens were detected, Italy, 2021. Inset shows region of interest in southern Italy (green shading). APU, Apulia; BAS, Basilicata; ...

We detected Candidatus M. mitochondrii DNA in 46 (34.1%, 95% CI 26.6%–42.4%) participants, among whom 11 tested negative for tickborne pathogens and 35 tested positive for >1 tickborne pathogen. The 35 participants who tested positive for tickborne infections and Candidatus M. mitochondrii DNA represented 18/54 (33.3%, 95% CI 22.2%–46.6%) of participants whose infections were detected serologically and 17/20 (85.0%, 95% CI 63.9%–94.7%) of participants whose infections were detected molecularly. Candidatus M. mitochondrii was statistically associated with each pathogen found (i.e., C. burnetii, R. raoultii, and B. lusitaniae) (Table 5; Figure 1). No clinical signs were reported in persons infected by Candidatus M. mitochondrii and we saw no statistically significant difference in the clinical signs between subjects who tested positive for tickborne pathogens and those who were positive for both tickborne pathogens and Candidatus M. mitochondrii (χ2 = 0.9, p = 0.342). A single case of Candidatus Wolbachia inokumae was molecularly detected in a participant infected by B. lusitaniae.

Consensus sequences of all bacteria species we detected displayed 99%–100% nucleotide identity with sequences available in the literature. We submitted sequences to GenBank under the following accession numbers: ON227500 for C. burnetii, ON228179 for R. raoultii, ON237925 for B. lusitaniae, OM982495–2502 for M. mitochondrii, and OM983334 for W. inokumae.

Figure 2

Maximum-likelihood phylogenic tree of endosymbiont Candidatus Midichloria mitochondrii clades detected with tickborne pathogens in humans exposed to tick bites, Italy, 2021. The tree corresponds to the IQ-TREE ( inferred from 38 partial (202 bp) DNA sequences with 28.7% of informative sites by using the Kimura 3-parameter model with empirical frequencies plus regression (TPM3+F+R2) model under 1,000 bootstrap replicates and maximum-likelihood method. Accession numbers and species name are indicated at the tip of each branch. Bold blue text indicates sequences amplified in the study area. The tree includes 123 query sequences representing all 16S rRNA entries from GenBank (blue circles on left) placed at the branch and leaf nodes by using the APPLES algorithm ( The ClustalX ( sequence alignment viewer of the informative sites from the 16S rRNA alignment and their 50% consensus are shown. Colored column at far right denotes taxonomic annotation; purple indicates clade A, blue indicates clade B, green indicates clade C, yellow indicates clade D, green indicates clade E, gray indicates outgroup. Ca., Candidatus.

Figure 2. Maximum-likelihood phylogenic tree of endosymbiont Candidatus Midichloria mitochondrii clades detected with tickborne pathogens in humans exposed to tick bites, Italy, 2021. The tree corresponds to the IQ-TREE (...

Phylogenetic analysis of the partial 16S rRNA gene revealed 8 sequence types and the existence of 5 distinct clades (clades A–E); the Candidatus M. mitochondrii sequence types we obtained belonged clade A (Figure 2). Pearson correlation (r) showed that Candidatus M. mitochondrii clade A was significantly correlated with vertebrate hosts (r = 0.32), Ixodes spp. ticks (r = 0.21), and countries in Europe (r = 0.46); clade B with Hyalomma ticks (r = 0.4) and Argasidae ticks (Ornithodoros spp.) (r = 0.36) and Africa (r = 0.48); clade C with Ixodes spp. ticks (r = 0.46); and clades D and E with marine sources (r = 0.57) (Appendix Figure).


We report a high serologic and molecular prevalence of infection by zoonotic tickborne bacteria in humans exposed to tick bites in rural areas of southern Italy. In addition, we noted an association between Candidatus M. mitochondrii and tickborne pathogens in humans, suggesting that this tick endosymbiont might be involved in these infections.

The finding of C. burnetii as the most representative tickborne pathogen in humans from southern Italy is a public health concern because prevalence of this bacterium in hard ticks is much higher in the Mediterranean Basin than in other areas of Europe (35). However, the high (27.4%) overall serologic and molecular prevalence we obtained contrasts with the low (0.5%) rate of molecular detection of the bacterium in ticks collected on citizens in the same study area (8). This finding suggests inhalation of contaminated aerosols, not tick bites, might be the main route of pathogen transmission among the study participants (36).

Detection of R. raoultii is relevant because this pathogen is considered an emerging spotted fever group rickettsiae among humans (37,38). Although no patient in our study showed the scalp eschar and neck lymphadenopathy that are typical clinical signs for differential diagnosis (39), the difference in clinical features might be dependent on the site of the tick bite on a person’s body (40).

Detection of B. lusitaniae in persons frequenting rural environments of southern Italy confirms the circulation of this zoonotic genospecies, which previously was reported in different hosts, such as the Italian wall lizard (Podarcis siculus) (41) and red foxes (Vulpes vulpes) (42), and in I. ricinus ticks collected on humans from the same study area (8). The human pathogenic role of B. lusitaniae has not been completely clarified, but the finding of erythematous macules from positive patients examined in this study is of clinical relevance because these skin lesions could cause chronic or long-lasting injuries associated with infiltration of the local subcutaneous tissues (43). In addition, co-infections in this human population and in ticks previously collected from citizens of the same study area (8), indicate that multiple pathogens could be transmitted by the same tick specimen and develop in the same host, complicating the clinical manifestation (7).

Despite the strong agreement (κ = 63.0%) in the comparison between serology and PCR, use of both serologic and molecular methods is crucial for identifying all cases of infection (44). Indeed, combining PCR and serology can be useful for detecting recent and old infections because PCR is sensitive <2 weeks of infection and serology is sensitive >2 weeks after illness onset (17).

The high molecular prevalence (34.1%) of Candidatus M. mitochondrii in participants exposed to tick bites is in accordance with the serologic rate (47.3%) previously outlined for this endosymbiont in humans (16), and confirms its role as a candidate tick-bite marker (17). Thus, because Candidatus M. mitochondrii is known to subsist in several hard tick species (18), its detection in human blood could be a useful tool for determining exposure to tick bites and to define tick populations circulating in a certain area. The statistical association between molecular positivity for tickborne pathogens and Candidatus M. mitochondrii demonstrated here suggests a link between endosymbiont and tickborne pathogen infections in humans, which was previously established through serologic methods (16). However, absence of clinical signs or symptoms in humans testing positive for Candidatus M. mitochondrii and the statistically significant difference in the clinical picture between participants who tested positive only for tickborne pathogens and those who tested positive for both tickborne pathogens and Candidatus M. mitochondrii, suggests that this bacterium might be not involved in the onset or overt pathogenesis of primary infections. Conversely, the hypothesis of a potential Candidatus M. mitochondrii–tickborne pathogen interaction within tick hosts needs further investigation, as previously demonstrated for this endosymbiont in regulating the growth of R. parkeri in its competent vector Amblyomma maculatum ticks (45).

Our results also highlight the occurrence of 8 Candidatus M. mitochondrii sequence types, suggesting patients were exposed to different tick species, which reinforces the hypothesis that Candidatus M. mitochondrii could be used as candidate marker to define the composition of the tick population biting humans in a certain area (4). In addition, the clustering of all sequence types into clade A, as we noted, is relevant for public health because this clade encompasses endosymbionts associated with vertebrate hosts, rather than to Ixodes spp. ticks, and geographic areas of Europe. On the other hand, the presence of the same Midichloria genotype within several tick species indicates that vertebrates might act as ecological arenas for intraspecies and interspecies–specific transmission of endosymbionts among hard ticks, which was previously suggested by similar 16S rRNA sequences in genetically distant tick species (46). Another phylogenetic study analyzed concatenated loci of 16S rRNA, and groEL and dnaK gene sequences, and reported 3 distinct clades (I, II, and III) of Candidatus M. mitochondrii associated with ticks, indicating the existence of 2 lineages including different tick species and 1 Ixodes genus (47).

Detection of W. inokumae DNA in humans might be a consequence of exposure to a blood meal by selected phlebotomine sandflies. In fact, W. inokumae has only been identified in Phlebotomus perniciosus sand fly specimens from France and Tunisia (48,49), where it has been indicated as endosymbiont of this arthropod species in the Mediterranean Basin.

Our data demonstrate a high circulation of tickborne pathogens and Candidatus M. mitochondrii in persons frequenting suburban and rural areas of southern Italy. Further experimental studies could clarify the biologic interaction between tickborne pathogens and Candidatus M. mitochondrii and the potential role of Candidatus M. mitochondrii in tickborne pathogen transmission to mammalian hosts. The set of 16S rRNA sequences and their cladogenetic classification we generated could be a useful template for future studies, especially for further description of new Candidatus M. mitochondrii clades.

In conclusion, the survey we describe relies on cooperation between different stakeholders, including patients, clinicians, and veterinarians. This type of surveillance could be a small step toward a One Health approach for monitoring and controlling the circulation of tickborne pathogens in suburban and rural areas (50).

Mr. Sgroi is a PhD candidate at the University of Bari Aldo Moro, Bari, Italy. His main research interests focus on biology, epidemiology, and control of vector-borne pathogens of zoonotic concern.



We thank all participants, physicians, and veterinary practitioners involved in the field activities, and we thank Chris Arme for his useful suggestions to the text and English language revisions.



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Cite This Article

DOI: 10.3201/eid2809.220329

Original Publication Date: August 10, 2022

1These authors contributed equally to this article.

Table of Contents – Volume 28, Number 9—September 2022

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