Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level
Stephanie Goya
1 , Christopher Ruis
2, Richard A. Neher
2, Adam Meijer, Ammar Aziz, Angie S. Hinrichs, Anne von Gottberg, Cornelius Roemer, Daniel G. Amoako
3, Dolores Acuña, Jakob McBroome, James R. Otieno, Jinal N. Bhiman, Josie Everatt, Juan C. Muñoz-Escalante, Kaat Ramaekers
4, Kate Duggan, Lance D. Presser, Laura Urbanska, Marietjie Venter, Nicole Wolter, Teresa C.T. Peret, Vahid Salimi, Varsha Potdar, Vítor Borges, and Mariana Viegas
1
Author affiliations: University of Washington, Seattle, Washington, USA (S. Goya); University of Cambridge, Cambridge, UK (C. Ruis); University of Basel and SIB, Basel, Switzerland (R.A. Neher, C. Roemer, L. Urbanska); National Institute for Public Health and the Environment, Bilthoven, the Netherlands (A. Meijer, L.D. Presser); World Health Organization Collaborating Centre for Reference and Research on Influenza, Melbourne, Victoria, Australia (A. Aziz); University of California Santa Cruz, Santa Cruz, California, USA (A.S. Hinrichs, J. McBroome); National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa (A. von Gottberg, J.N. Bhiman, J. Everatt, N. Wolter); University of Witwatersrand, Johannesburg, South Africa (A. von Gottberg, J.N. Bhiman, N. Wolter); University of KwaZulu-Natal, Durban, South Africa (D.G. Amoako); Universidad Nacional de La Plata, Buenos Aires, Argentina (D. Acuña, M. Viegas); National Scientific and Technical Research Council, Buenos Aires, Argentina (D. Acuña, M. Viegas); Theiagen Genomics, Highlands Ranch, Colorado, USA (J.R. Otieno); Autonomous University of San Luis Potosí, San Luis Potosí, Mexico (J.C. Muñoz-Escalante); Rega Institute for Medical Research, Leuven, Belgium (K. Ramaekers); University of Edinburgh, Edinburgh, Scotland, UK (K. Duggan); University of Pretoria, Pretoria, South Africa (M. Venter); University of Texas Medical Branch, Galveston, Texas, USA (T.C.T. Peret); Tehran University of Medical Sciences, Tehran, Iran (V. Salimi); ICMR National Institute of Virology, Pune, India (V. Potdar); National Institute of Health Doutor Ricardo Jorge, Lisbon, Portugal (V. Borges)
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Figure 2
Figure 2. The global HRSV genomics surveillance landscape. HRSV genomes from GenBank and GISAID (https://www.gisaid.org) databases through March 11, 2023, that met inclusion criteria used for classification are shown by year of sample collection and subgroup (A) and by country of origin (B). HRSV, human respiratory syncytial virus.
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