Volume 31, Supplement—May 2025
SUPPLEMENT ISSUE
Supplement
SARS-CoV-2 Genomic Surveillance from Community-Distributed Rapid Antigen Tests, Wisconsin, USA
Table 2
Lineages detected during SARS-CoV-2 genomic surveillance from community-distributed rapid antigen tests, Wisconsin, USA*
Date† |
Highest percentage‡ |
Second highest percentage§ |
No. RATs with passing sequence¶ |
Other lineages detected via RAT sequencing |
|||
---|---|---|---|---|---|---|---|
Wastewater lineage |
Matching RAT lineages |
Wastewater lineage |
Matching RAT lineages |
||||
2023 Aug 28 |
EG.5.1 |
EG.5.1.4 |
XBB.1.16 |
XBB.1.16.11 |
5 |
FL.1.5.1, XBB.2.3 |
|
2023 Sep 11 |
EG.5.1 |
EG.5.1.13 |
XBB.1.16 |
XBB.1.16 |
8 |
XBB.1.5.10, XBB.1.5, GE.1,HK.9, JF.1.1, HH.1 |
|
2023 Sep 25 |
EG.5.1 |
EG.5.1.4 |
XBB.1.16 |
XBB.1.16 |
4 |
GJ.1.2, FL.1.5.1 |
|
2023 Oct 9 |
EG.5.1 |
HV.1, HV.1.8 |
XBB.1.9 |
None |
8 |
HK.29, JN.1.1, XBB.1.16.9 |
|
2023 Oct 23 |
EG.5.1 |
None |
XBB.1.16 |
None |
2 |
XCH.1, DV.7.1 |
|
2023 Nov 6 |
EG.5.1 |
EG.5.1.1, EG.5.1.6 |
XBB.1.16 |
None |
6 |
FL.1.5.1, HK.13.2.1, HK.26 |
|
2023 No 20 |
EG.5.1 |
EG.5.1.1, EG.5.1.6, HV.1 |
XBB.1.16 |
XBB.1.16.6 |
10 |
HK.26, GK.1.1, JN.1.4.5, HK.3, JN.1 |
|
2023 Dec 4 |
EG.5.1 |
HV.1, HV.1.2, HV.1.6 |
BA.2.86 |
JN.1, JN.1.1, JN.1.38 |
14 |
XDA, XCV, GK.1.8 |
|
2023 Dec 18 |
BA.2.86 |
JN.1, JN.1.1, JN.1.4, JN.1.42 |
EG.5.1 |
EG.5.1, EG.5.1.8, HV.1 |
11 |
JG.3, GW.5.1.1, GK.1.6.1 |
|
2024 Jan 1 |
BA.2.86 |
JN.1, JN.1.39 |
EG.5.1 |
None |
3 |
None |
|
2024 Jan 15 |
BA.2.86 |
JN.1, JN.1.38, JN.1.4, JN.1.42 |
EG.5.1 |
HV.1 |
15 |
JG.3, XDD, XDP, JC.5.1, HK.3.2 |
|
2024 Jan 29 |
BA.2.86 |
JN.1, JN.1.1 |
EG.5.1 |
None |
9 |
None |
|
2024 Feb 12 | BA.2.86 | JN.1, JN.1.42 | XBB.2.3 | None | 4 | None |
*Lineages represent successful rapid antigen test sequences that corresponded to the 2 most prevalent lineage groups in the wastewater signal in the state of Wisconsin for each 2-week period. RAT, rapid antigen test. †Dates represent first day of each 2-week reporting period. ‡Lineage group comprising the first largest percentage of wastewater data. §Lineage group comprising the second largest percentage of wastewater data. ¶Passing sequences had >90% genome coverage at >10× depth.