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Volume 15, Number 2—February 2009
Research

Simian T-Lymphotropic Virus Diversity among Nonhuman Primates, Cameroon

David M. Sintasath, Nathan D. Wolfe1, Matthew LeBreton, Hongwei Jia, Albert D. Garcia, Joseph Le Doux Diffo, Ubald Tamoufe, Jean K. Carr, Thomas M. Folks, Eitel Mpoudi-Ngole, Donald S. Burke2, Walid Heneine, and William M. SwitzerComments to Author 
Author affiliations: Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA (D.M. Sintasath, D.S. Burke); University of California School of Public Health, Los Angeles, California, USA (N.D. Wolfe, U. Tamoufe); Johns Hopkins Cameroon Program, Yaoundé, Cameroon (M. LeBreton, J.L.D. Diffo, U. Tamoufe, E. Mpoudi-Ngole); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (H. Jia, A. D. Garcia, T.M. Folks, W. Heneine, W.M. Switzer); University of Maryland Biotechnology Institute, Baltimore (J.K. Carr)

Main Article

Figure 2

Primate T-lymphotropic virus (PTLV) phylogeny inferred by using 161-bp tax sequences. New sequences from nonhuman primates (NHPs) from Cameroon in this study are in boldface. Support for the branching order was determined by 1,000 bootstrap replicates; only values >60% are shown. Branch lengths are proportional to the evolutionary distance (scale bar) between the taxa. Nonhuman primates are coded as follows: the first letter of the genus is followed by the first 2 letters of the species name:

Figure 2. Primate T-lymphotropic virus (PTLV) phylogeny inferred by using 161-bp tax sequences. New sequences from nonhuman primates (NHPs) from Cameroon in this study are in boldface. Support for the branching order was determined by 1,000 bootstrap replicates; only values >60% are shown. Branch lengths are proportional to the evolutionary distance (scale bar) between the taxa. Nonhuman primates are coded as follows: the first letter of the genus is followed by the first 2 letters of the species name: Cmo, Cercopithecus mona; Cni, Cercopithecus nictitans; Cto, Cercocebus torquatus; Ppa, Papio papio; Ph, Papio hamadryas; Tge, Theropithecus gelada. Cag, Cercocebus agilis; Lal, Lophocebus albigena; Mnd and msp, Mandrillus sphinx; PanP and PP, Pan paniscus; Ptr, Pan troglodytes; Ggo, Gorilla gorilla; Tan, tantalus monkey; Cag, Cercocebus agilis; Mar, Macaca arctoides; Pha, Papio hamadryas; Pan, Papio anubis; Bab, baboon; HYB, hybrid baboon (Pha X Pan); Cae, Chlorocebus aethiops (AGM, African green monkey); Cpo, Cercopithecus pogonias; Cmi, Cercopithecus mitis; Cce, Cercopithecus cephus; Ang, Allenopithecus nigroviridis; Wrc, Western red colobus. The last 2 letters in the code indicate the study site: AB, Abat; MV, Mvangan; NY, Nyabissan; NL, Ngoila; MN, Manyemen; BA, Bangourain; MA, Massangam; YI, Yingui; ND, Ndikinimeki; NG, Ngovayan; SA, Sobia; LE, Lomie; MO, Mouloundou.

Main Article

1Current affiliation: Stanford University, Stanford, California, USA.

2Current affiliation: University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, USA.

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