Volume 18, Number 12—December 2012
Research
Virulent Avian Infectious Bronchitis Virus, People’s Republic of China
Table 1
Primers used to amplify the complete genomic sequence of avian infectious bronchitis virus YN strain, People’s Republic of China
Primer* | Location, bp | Upstream primer | Downstream primer | Length, bp |
---|---|---|---|---|
1 | 22–1,475 | ATATCATACATACTAGCCTTG | AGTTAAGTCGTTTCGCATG | 1,454 |
2 | 1,302–2,411 | CCAACTGGTTTTATGGGTGC | TGGAAGTGTCACTGCCTCG | 1,110 |
3 | 2,240–3,784 | ACTTGGTAGAGTTTCTGGGG | TTGACATACGAAGGTGTGACA | 1,545 |
4 | 3,635–5,161 | TGTAAACGCCGCAAATGAG | GGCAACTTGGAATCCTCTT | 1,527 |
5 | 5,040–6,636 | GATCTTACTGACTTTGAAC | CACTGAAACACTTAACTG | 1,597 |
6 | 6,424–7,936 | GGAATTGTGACGAGTATGG | TGAAAGTATACCCTATGAGGA | 1,513 |
7 | 7,746–9,246 | GAAATTGTCGGTTACACTCAG | TAGAACGCATAGTAACAGGG | 1,501 |
8 | 9,130–9,985 | CTAACGCTGAAACTCCA | GTTGGCAATAGGAAAGTA | 856 |
9 | 9,082–10,645 | TCAGTAGGCGGATAAAAGG | ATAGGCAACACACGGTCG | 1,564 |
10 | 10,516–12,092 | ATTTCAAAGTTTCGGTTGACC | CACAGAAGCTCCTCCATAG | 1,577 |
11 | 11,861–13,471 | GTTTTACAATCTAAAGGTCAT | AAGAGCGGGATCTCCTAC | 1,611 |
12 | 13,270–14,908 | CAACATTCTTTTCTCTACAC | GATATAACGCTCCATAACT | 1,639 |
13 | 14,712–16,138 | CTGATTCTAAGTGTTGGGTTG | TCCTTTGAGGTACTATGCGA | 1,427 |
14 | 16,027–17,539 | TGCTCGTGTTGTTTTTACTGC | CACTTGCTCCTTGCCTATTTT | 1,513 |
15 | 17,362–18,993 | CCACTTGAGGGCTTTGT | TAAACATACAGGTTCGCT | 1,632 |
16 | 18,945–20,442 | AAGCGGTATYCNTATGTAGAA | ATAGTRCAVACAAAAKRGTCA | 1,498 |
17 | 20,336–21,920 | ACTGAACAAAAGACMGACTT | CCACCAGAAACTACAACT | 1,585 |
18 | 21,873–22,919 | AAGGTTAATCCCTGTGAAG | AGTYTCVGTAAGAATAGCA | 1,047 |
19 | 22,723–23,837 | CTTTTGCHACTCAGATDCA | AGATTTCTTACCACACTTACT | 1,115 |
20 | 23,435–24,898 | ATTTGTAGAAGATGACGAT | CATTGTTGACCATTAGTTA | 1,464 |
21 | 24,747–26,141 | GCAGCGATAATACTTACCGTG | GCTTGGCGTCTCCAGTATC | 1,395 |
22 | 25,965–27,650 | TATCAAACTAGGAGGACCA | GCTCTAACTCTAAACTAGCCT | 1,686 |
*Primer locations are listed according to strain SC021202 (GenBank accession no. EU714029).