Volume 20, Number 3—March 2014
Research
High-level Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Widely Separated Outbreaks
Table 2
Strains | No. strains with SNP/no. tested (%) |
|||
---|---|---|---|---|
rpoB T 2569 | rpoB C 2760 | rpoB T 2569 and rpoB C 2760 | secA1 T 820 | |
MAB (CSU) | 0/44 (0) | 44/44 (100) | 0/44 (0) | NT |
MAB (NIH) | 0/29 (0) | 29/29 (100) | 0/29 (0) | 0/29 (0) |
MMA non-outbreak strain (CSU) | 1/14 (7) | 1/14 (7) | 0/14 (0) | NT |
MMA non- outbreak strain (NIH) | 4/12 (33) | 10/ 12 (83) | 4/12 (33) | 2/12 (17) |
MMA Seattle | 4/ 4 (100) | 4/4 (100) | 4/4 (100) | 3/3 (100) |
MMA Brazil | 9/ 9 (100) | 9/9 (100) | 9/9 (100) | NT |
MBO (CSU) | 0/11 (0) | 11/11 (100) | 0/11 (0) | NT |
MBO (NIH) | 0/2 (0) | 2/2 (100) | 0/2 (0) | 0/2 (0) |
Other RGM (CSU) | 0/42 (0) | 0/42 (0) | 0/42 (0) | NT |
MMA type strain | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
MMA In silico data† | ||||
MMA UK | 6/6 (100) | 6/6 (100) | 6/6 (100) | 6/6 (100) |
MMA Seattle | 3/3 (100) | 3/3 (100) | 3/3 (100) | 3/3 (100) |
MMA Brazil | 2/2 (100) | 2/2 (100) | 2/2 (100) | 0/2 (0) |
47J26 | 1/1 (100) | 1/ 1 (100) | 1/1 (100) | 1/1 (100) |
M18 | 1/1 (100) | 1/1 (100) | 1/1 (100) | 1/1 (100) |
1S-151–0930 | 1/1 (100) | 1/1 (100) | 1/1 (100) | 0/1 (0) |
5S-0817 | 0/1 (0) | 1/1 (100) | 0/1 (0) | 0/1 (0) |
M115 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
M139 | 0/1 (0) | 1/1 (100) | 0/1 (0) | 0/1 (0) |
M148 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
M154 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
M156 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
M159 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
M172 | 0/1 (0) | 0/1 (0) | 0/1 (0) | 0/1 (0) |
Asan 50594 | 0/1 (0) | 1/1 (100) | 0/1 (0) | 0/1 (0) |
*SNP, single-nucleotide polymorphism; MAB, M. abscessus subsp. abscessus; NT, not tested. CSU, Colorado State University; NIH, National Institutes of Health; MMA, M. abscessus subsp. massiliense; MBO, M. abscessus subsp. bolletii; RGM, rapidly growing mycobacteria.
†Information collected from available whole genome sequencing data.
Page created: February 19, 2014
Page updated: February 19, 2014
Page reviewed: February 19, 2014
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