Volume 24, Number 5—May 2018
Dispatch
Equine Encephalosis Virus in India, 2008
Table 2
Nucleotide and amino acid divergence of different EEV strains from the EEV isolated from a horse in India, 2008*
EEV GenBank sequence |
Nucleotide and amino acid divergence, % | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NS1, 1,728 nt |
NS2, 1,183 nt |
NS3, 769 nt |
VP1, 3,948 nt |
VP2, 3,158 nt |
VP3, 2,758 nt |
VP4, 1,958 nt |
VP5, 1,584 nt |
VP6, 1,062 nt |
VP7, 1,165 nt |
||||||||||||||||||||
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
||||||||||
EEV lungs NIV India | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||
AB811632.1 EEV Kimron1 | 7 | 1 | 6 | 15 | 26 | 17 | 2 | 1 | 46 | 50 | 3 | 0 | 4 | 11 | 27 | 14 | 4 | 7 | 4 | 0 | |||||||||
FJ183388.1 EEV HS103/06 | 5 | 2 | 1 | 5 | 25 | 16 | 6 | 1 | 12 | 8 | 4 | 1 | 1 | 3 | 9 | 2 | 5 | 8 | 3 | 0 | |||||||||
HQ630889.1 EEV strain 6 | 7 | 2 | 4 | 12 | 1 | 2 | 1 | 0 | 47 | 55 | 7 | 1 | 4 | 10 | 28 | 17 | 4 | 6 | 7 | 0 | |||||||||
HQ630899.1 EEV strain 4 | 5 | 2 | 3 | 7 | 26 | 15 | 4 | 1 | 11 | 8 | 5 | 0 | 3 | 8 | 8 | 1 | 5 | 9 | 4 | 0 | |||||||||
HQ630909.1 EEV strain 1 | 4 | 2 | 3 | 10 | 25 | 15 | 5 | 1 | 43 | 47 | 2 | 0 | 4 | 11 | 26 | 12 | 5 | 7 | 4 | 0 | |||||||||
HQ630919.1 EEV strain 2 | 4 | 1 | 3 | 9 | 4 | 4 | 8 | 2 | 43 | 48 | 3 | 0 | 13 | 32 | 24 | 11 | 3 | 5 | 6 | 0 | |||||||||
HQ630929.1 EEV strain 3 | 4 | 2 | 7 | 19 | 25 | 15 | 5 | 1 | 46 | 50 | 5 | 0 | 2 | 6 | 27 | 15 | 5 | 8 | 2 | 0 | |||||||||
HQ630939.1 EEV strain 5 | 4 | 2 | 3 | 7 | 9 | 7 | 5 | 1 | 49 | 57 | 2 | 0 | 3 | 8 | 27 | 16 | 7 | 10 | 3 | 0 | |||||||||
HQ630949.1 EEV strain 7 | 5 | 2 | 5 | 13 | 9 | 7 | 6 | 1 | 50 | 59 | 4 | 0 | 2 | 4 | 28 | 17 | 1 | 2 | 3 | 0 |
*AD, amino acid divergence; EEV, equine encephalosis virus; ND, nucleotide divergence; NIV, National Institute of Virology, Pune, India; NS, nonstructural protein; VP, virus capsid protein.