Volume 24, Number 5—May 2018
Dispatch
Equine Encephalosis Virus in India, 2008
Pragya D. Yadav, César G. Albariño, Dimpal A. Nyayanit, Lisa Guerrero, M. Harley Jenks, Prasad Sarkale, Stuart T. Nichol, and Devendra T. Mourya
Table 2
Nucleotide and amino acid divergence of different EEV strains from the EEV isolated from a horse in India, 2008*
| EEV GenBank sequence |
Nucleotide and amino acid divergence, % | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NS1, 1,728 nt |
NS2, 1,183 nt |
NS3, 769 nt |
VP1, 3,948 nt |
VP2, 3,158 nt |
VP3, 2,758 nt |
VP4, 1,958 nt |
VP5, 1,584 nt |
VP6, 1,062 nt |
VP7, 1,165 nt |
||||||||||||||||||||
| ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
ND |
AD |
||||||||||
| EEV lungs NIV India | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||
| AB811632.1 EEV Kimron1 | 7 | 1 | 6 | 15 | 26 | 17 | 2 | 1 | 46 | 50 | 3 | 0 | 4 | 11 | 27 | 14 | 4 | 7 | 4 | 0 | |||||||||
| FJ183388.1 EEV HS103/06 | 5 | 2 | 1 | 5 | 25 | 16 | 6 | 1 | 12 | 8 | 4 | 1 | 1 | 3 | 9 | 2 | 5 | 8 | 3 | 0 | |||||||||
| HQ630889.1 EEV strain 6 | 7 | 2 | 4 | 12 | 1 | 2 | 1 | 0 | 47 | 55 | 7 | 1 | 4 | 10 | 28 | 17 | 4 | 6 | 7 | 0 | |||||||||
| HQ630899.1 EEV strain 4 | 5 | 2 | 3 | 7 | 26 | 15 | 4 | 1 | 11 | 8 | 5 | 0 | 3 | 8 | 8 | 1 | 5 | 9 | 4 | 0 | |||||||||
| HQ630909.1 EEV strain 1 | 4 | 2 | 3 | 10 | 25 | 15 | 5 | 1 | 43 | 47 | 2 | 0 | 4 | 11 | 26 | 12 | 5 | 7 | 4 | 0 | |||||||||
| HQ630919.1 EEV strain 2 | 4 | 1 | 3 | 9 | 4 | 4 | 8 | 2 | 43 | 48 | 3 | 0 | 13 | 32 | 24 | 11 | 3 | 5 | 6 | 0 | |||||||||
| HQ630929.1 EEV strain 3 | 4 | 2 | 7 | 19 | 25 | 15 | 5 | 1 | 46 | 50 | 5 | 0 | 2 | 6 | 27 | 15 | 5 | 8 | 2 | 0 | |||||||||
| HQ630939.1 EEV strain 5 | 4 | 2 | 3 | 7 | 9 | 7 | 5 | 1 | 49 | 57 | 2 | 0 | 3 | 8 | 27 | 16 | 7 | 10 | 3 | 0 | |||||||||
| HQ630949.1 EEV strain 7 | 5 | 2 | 5 | 13 | 9 | 7 | 6 | 1 | 50 | 59 | 4 | 0 | 2 | 4 | 28 | 17 | 1 | 2 | 3 | 0 | |||||||||
*AD, amino acid divergence; EEV, equine encephalosis virus; ND, nucleotide divergence; NIV, National Institute of Virology, Pune, India; NS, nonstructural protein; VP, virus capsid protein.
Page created: April 17, 2018
Page updated: April 17, 2018
Page reviewed: April 17, 2018
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