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Volume 28, Number 2—February 2022
Research

Genetic Relatedness of Infectious Hypodermal and Hematopoietic Necrosis Virus Isolates, United States, 2019

Arun K. DharComments to Author , Roberto Cruz-Flores, Janet Warg, Mary L. Killian, Andrew Orry, Jorge Ramos, Michelle Garfias, and Gregory Lyons
Author affiliations: The University of Arizona, Tucson, Arizona, USA (A.K. Dhar, R. Cruz-Flores, J. Ramos, M. Garfias, G. Lyons); US Department of Agriculture National Veterinary Services Laboratories, Ames, Iowa, USA (J. Warg, M.L. Killian); Molsoft, Inc., San Diego, California, USA (A. Orry)

Main Article

Figure 2

Evolutionary relationships of the infectious hypodermal and hematopoietic necrosis virus (IHHNV) strains (19-428, 19-490, and 19-644) recently detected in the United States and published capsid protein gene sequences. The recent IHHNV strains (red box) fall into the type 2 lineage. The evolutionary history was inferred by using the neighbor-joining method (24). The optimal tree with the sum of branch length = 0.20086053 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed by using the maximum-likelihood method (25). Based upon full-genome phylogenetic analysis, the Texas and Florida IHHNV viruses appear to be related to a strain from Ecuador (GenBank accession no. AY362548.1). Scale bar indicates substitutions per site.

Figure 2. Evolutionary relationships of the infectious hypodermal and hematopoietic necrosis virus (IHHNV) strains (19-428, 19-490, and 19-644) recently detected in the United States and published capsid protein gene sequences. The recent IHHNV strains (red box) fall into the type 2 lineage. The evolutionary history was inferred by using the neighbor-joining method (24). The optimal tree with the sum of branch length = 0.20086053 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed by using the maximum-likelihood method (25). Based upon full-genome phylogenetic analysis, the Texas and Florida IHHNV viruses appear to be related to a strain from Ecuador (GenBank accession no. AY362548.1). Scale bar indicates substitutions per site.

Main Article

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Page created: December 08, 2021
Page updated: January 24, 2022
Page reviewed: January 24, 2022
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