Volume 15, Number 2—February 2009
Research
Simian T-Lymphotropic Virus Diversity among Nonhuman Primates, Cameroon
Table 4
Nonhuman primate | Subtype D |
Subtype C |
Subtype B |
Subtype A |
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cmo 8699AB† | Cni 7867AB† | Cni 217‡ | Cni 227‡ | Cni 3034§ | Cni 3038¶ | 2026 ND | Cto604 | CtoNG 409 | PPAF3 | Ph969 | Tge 2117 | ||||
Cmo8699AB | – | 99.9 | 92.7 | 93.2 | 93.5 | 93.1 | 82.7 | 83.4 | 83.5 | 83.5 | 84.5 | 84.2 | |||
Cni7867AB | – | 92.7 | 93.2 | 93.5 | 93.1 | 82.7 | 83.4 | 83.5 | 83.5 | 84.5 | 84.2 | ||||
Cni217 | – | 99.5 | 98.2 | 98.5 | 84.5 | 86.3 | 88.1 | 86.8 | 88.6 | 88.1 | |||||
Cni227 | – | 98.8 | 99.1 | 84.9 | 86.8 | 87.7 | 87.2 | 89.0 | 88.6 | ||||||
Cni3034 | – | 100.0 | 82.2 | 82.4 | 82.8 | 83.6 | 83.9 | 83.7 | |||||||
Cni3038 | – | 82.5 | 82.7 | 83.1 | 83.7 | 84.1 | 83.9 | ||||||||
2026ND | – | 91.6 | 93.0 | 94.1 | 87.0 | 90.4 | |||||||||
Cto604 | – | 92.4 | 92.5 | 87.5 | 92.0 | ||||||||||
CtoNG409 | – | 94.2 | 86.8 | 90.7 | |||||||||||
PPAF3 | – | 88.5 | 90.8 | ||||||||||||
Ph969 | – | 95.8 | |||||||||||||
Tge2117 | – |
*STLVs, simian T-lymphotropic viruses; PTLVs, primate T-lymphotropic viruses. Boldface indicates intersubgroup identities; shading indicates intrasubgroup identities. Nonhuman primates are coded as follows: the first letter of the genus is followed by the first 2 letters of the species name: Cmo, Cercopithecus mona; Cni, C. nictitans; Cto, Cerococebus torquatus; Ppa, Papio papio; Ph, Papio hamadryas; Tge, Teropithecus gelada. The last 2 letters in the code indicate the study site: AB, Abat; ND, Ndikinimeki.
†Partial tax sequence (1015 bp).
‡Partial tax sequence (219 bp).
§Partial tax sequence (170 bp).
¶Partial tax sequence (202 bp).
1Current affiliation: Stanford University, Stanford, California, USA.
2Current affiliation: University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, USA.