Volume 10, Number 9—September 2004
Research
Genotyping, Orientalis-like Yersinia pestis, and Plague Pandemics
Table 1
Alleles of eight spacers in three Yersinia pestis biovars
Biovar | YP no. strains | Country | YP1 | YP3 | YP4 | YP5 | YP7 | YP8 | YP9 | YP10 | Isolate type |
---|---|---|---|---|---|---|---|---|---|---|---|
Antiqua | |||||||||||
611/Japan | Japan | 1 | 4 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | |
552/Margaret | Kenya | 1 | 3 | 1 | 1 | 4 | 1 | 1 | 1 | 2 | |
548/343 | Belgium | 1 | 3 | 1 | 1 | 5 | 1 | 1 | 1 | 3 | |
544 | Congo | 1 | 3 | 1 | 1 | 7 | 1 | 1 | 1 | 4 | |
549 | Kenya | 1 | 3 | 1 | 1 | 8 | 1 | 1 | 1 | 5 | |
542 | Belgium | 1 | 3 | 1 | 1 | 6 | 1 | 1 | 1 | 6 | |
550 | Congo | 1 | 3 | 1 | 1 | 9 | 1 | 1 | 1 | 7 | |
553 | Kenya | 1 | 3 | 1 | 1 | 7 | 1 | 1 | 1 | 4 | |
566 | Kenya | 1 | 3 | 1 | 1 | 6 | 1 | 1 | 1 | 6 | |
677 | Kenya | 1 | 3 | 1 | 1 | 9 | 1 | 1 | 1 | 7 | |
545 | Kenya | 1 | 3 | 1 | 1 | 7 | 1 | 1 | 1 | 4 | |
Medievalis | |||||||||||
519/PKH-4 | Kurdistan | 2 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 10 | |
616/PAR-13 | Iran | 2 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 8 | |
557/PKR292 | Kurdistan | 2 | 2 | 2 | 2 | 4 | 1 | 1 | 1 | 9 | |
564 | Kurdistan | 2 | 2 | 2 | 2 | 6 | 1 | 1 | 1 | 10 | |
565 | Turkey | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
557 | Kurdistan | 2 | 2 | 2 | 2 | 4 | 1 | 1 | 1 | 9 | |
518 | Kurdistan | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
520 | Kurdistan | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
560 | Kurdistan | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
561 | Kurdistan | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
617 | Iran | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
670 | Kurdistan | 2 | 2 | 2 | 2 | 5 | 1 | 1 | 1 | 8 | |
1594 | Kurdistan | 2 | 2 | 2 | 2 | 9 | 1 | 1 | 1 | 11 | |
Orientalis | |||||||||||
304/6-69 | Madagascar | 1 | 5 | 1 | 1 | 1 | 2 | 2 | 1 | 12 | |
685 | Germany | 1 | 5 | 1 | 1 | 2 | 2 | 2 | 1 | 13 | |
Hamburg10 | USA | 1 | 5 | 1 | 1 | 2 | 2 | 2 | 2 | 14 | |
CO92 | USA | 1 | 5 | 1 | 1 | 2 | 2 | 2 | 1 | 13 | |
507 | Vietnam | 1 | 1 | 1 | 1 | 6 | 2 | 2 | 1 | 15 | |
1513 | Madagascar | 1 | 5 | 1 | 1 | 2 | 2 | 2 | 1 | 16 | |
571 | Brazil | 1 | 5 | 1 | 1 | 4 | 2 | 2 | 1 | 17 | |
613 | Myanmar | 1 | 5 | 1 | 1 | 3 | 2 | 2 | 1 | 18 | |
643 | Madagascar | 1 | 5 | 1 | 1 | 3 | 2 | 2 | 1 | 18 | |
695 | Germany | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 1 | 17 | |
772 | Vietnam | 1 | 5 | 1 | 1 | 4 | 2 | 2 | 1 | 17 | |
989 | Vietnam | 1 | 5 | 1 | 1 | 1 | 2 | 2 | 1 | 19 |