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CDC EID journal Volume 10 Number 9—September 2004 Main Article

Volume 10, Number 9—September 2004

Research

Genotyping, Orientalis-like Yersinia pestis, and Plague Pandemics

Michel Drancourt*, Véronique Roux*, La Vu Dang*, Lam Tran-Hung*, Dominique Castex†, Viviane Chenal-Francisque‡, Hiroyuki Ogata§, Pierre-Edouard Fournier*, Eric Crubézy¶, and Didier Raoult*Comments to Author 
Author affiliations: *Université de la Méditerranée, Marseille, France; †Université de Bordeaux 1, Talence, France; ‡Institut Pasteur, Paris, France; §Information Génomique et Structurale, Marseille, France; ¶Université Paul Sabatier, Toulouse, France

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Appendix 3

Comparison of Yp1 spacer sequence derived from ancient specimens with our local spacer sequence databasea

Yersinia pestis strains Score (bits) E value
Antiqua 545 773 0.0
Antiqua 677 773 0.0
Antiqua 566 773 0.0
Antiqua 553 773 0.0
Antiqua 544 773 0.0
Antiqua 550 773 0.0
Antiqua 542 773 0.0
Antiqua 549 773 0.0
Orientalis 1537 773 0.0
Orientalis 989 773 0.0
Orientalis 695 773 0.0
Orientalis 643 773 0.0
Orientalis 613 773 0.0
Orientalis 571 773 0.0
Orientalis 1513 773 0.0
Orientalis 507 773 0.0
Orientalis CO92 773 0.0
Orientalis 685 773 0.0
Antiqua 611 773 0.0
Antiqua 552 773 0.0
Antiqua 548 773 0.0
Antiqua 304 773 0.0
Medievalis 1594 305 4e-86
Medievalis 670 305 4e-86
Medievalis 617 305 4e-86
Medievalis 561 305 4e-86
Medievalis 560 305 4e-86
Medievalis 520 305 4e-86
Medievalis 518 305 4e-86
Medievalis 557 305 4e-86
Medievalis 565 305 4e-86
Medievalis 564 305 4e-86

aSequences in our database that produced significant alignments are indicated.

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The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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