Volume 10, Number 9—September 2004
Research
Genotyping, Orientalis-like Yersinia pestis, and Plague Pandemics
Appendix 3
Comparison of Yp1 spacer sequence derived from ancient specimens with our local spacer sequence databasea
Yersinia pestis strains | Score (bits) | E value |
---|---|---|
Antiqua 545 | 773 | 0.0 |
Antiqua 677 | 773 | 0.0 |
Antiqua 566 | 773 | 0.0 |
Antiqua 553 | 773 | 0.0 |
Antiqua 544 | 773 | 0.0 |
Antiqua 550 | 773 | 0.0 |
Antiqua 542 | 773 | 0.0 |
Antiqua 549 | 773 | 0.0 |
Orientalis 1537 | 773 | 0.0 |
Orientalis 989 | 773 | 0.0 |
Orientalis 695 | 773 | 0.0 |
Orientalis 643 | 773 | 0.0 |
Orientalis 613 | 773 | 0.0 |
Orientalis 571 | 773 | 0.0 |
Orientalis 1513 | 773 | 0.0 |
Orientalis 507 | 773 | 0.0 |
Orientalis CO92 | 773 | 0.0 |
Orientalis 685 | 773 | 0.0 |
Antiqua 611 | 773 | 0.0 |
Antiqua 552 | 773 | 0.0 |
Antiqua 548 | 773 | 0.0 |
Antiqua 304 | 773 | 0.0 |
Medievalis 1594 | 305 | 4e-86 |
Medievalis 670 | 305 | 4e-86 |
Medievalis 617 | 305 | 4e-86 |
Medievalis 561 | 305 | 4e-86 |
Medievalis 560 | 305 | 4e-86 |
Medievalis 520 | 305 | 4e-86 |
Medievalis 518 | 305 | 4e-86 |
Medievalis 557 | 305 | 4e-86 |
Medievalis 565 | 305 | 4e-86 |
Medievalis 564 | 305 | 4e-86 |
aSequences in our database that produced significant alignments are indicated.