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Volume 10, Number 9—September 2004

Genotyping, Orientalis-like Yersinia pestis, and Plague Pandemics

Michel Drancourt*, Véronique Roux*, La Vu Dang*, Lam Tran-Hung*, Dominique Castex†, Viviane Chenal-Francisque‡, Hiroyuki Ogata§, Pierre-Edouard Fournier*, Eric Crubézy¶, and Didier Raoult*Comments to Author 
Author affiliations: *Université de la Méditerranée, Marseille, France; †Université de Bordeaux 1, Talence, France; ‡Institut Pasteur, Paris, France; §Information Génomique et Structurale, Marseille, France; ¶Université Paul Sabatier, Toulouse, France

Main Article

Appendix 2

Results of BLAST comparisons obtained with ancient Yersinia pestis sequences compared with GenBanka

GenBank accession no. Y. pestis strains Score (bits) E value
AJ414158 CO92 773 0.0
AE013696 KIM 339 2e-90
AJ414156 CO92 339 2e-90
AE013666 KIM 337 9e-90
AJ414142 CO92 337 9e-90
AE013658 KIM 335 4e-89
AJ414143 CO92 335 4e-89
AE013654 KIM 333 2e-90
AJ414141 CO92 333 1e-88
AE013762 KIM 331 1e-88
AE014013 KIM 331 6e-88
AE013955 KIM 331 6e-88
AE013932 KIM 331 6e-88
AE013931 KIM 331 6e-88
AE013879 KIM 331 6e-88
AE013736 KIM 331 6e-88
AE013733 KIM 331 6e-88
AE013725 KIM 331 6e-88
AE013712 KIM 331 6e-88
AJ414160 CO92 331 6e-88

aSequences in GenBank produced significant alignments with the Yp1 sequence from skeleton 5.

Main Article

Page created: March 03, 2014
Page updated: March 03, 2014
Page reviewed: March 03, 2014
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