Volume 23, Number 8—August 2017
Added Value of Next-Generation Sequencing for Multilocus Sequence Typing Analysis of a Pneumocystis jirovecii Pneumonia Outbreak1
||Date of symptom onset||Date of diagnosis||Time to diagnosis, d||Incubation, d|
|T2||Index patient||ND||ND||2014 May 25||2014 May 30||5||ND|
|T4||T2||12 May 2014||Surgical cardiology outpatient unit||2014 Jul 01||2014 Jul 06||5||49|
|T5||T2||2014 Apr 18||Kidney transplant unit||2014 Aug 05||2014 Aug 19||14||109|
|T7†||T5||2014 Apr 22||Cardiac echography unit||2014 Oct 09||2014 Oct 29||20||170|
|T8||T5||2014 Aug 07||Transplant consultation unit||2014 Nov 14||2014 Nov 24||11||99|
|T10||T8||2014 Nov 23||Transplant consultation unit||2015 Jan 05||2015 Jan 10||5||48|
*Date of transmission based on transmission map and previously defined criteria of transmission. ND, not determined.
†Patient carrying the C2a genotype as a minor strain.
1Preliminary results from this study were presented at the American Society for Microbiology Microbe 2016 Conference, June 16–20, 2016, Boston, Massachusetts, USA.
2Current affiliation: Centre Hospitalier Universitaire Limoges, Limoges, France.