Volume 21, Number 4—April 2015
Research
Sequence Variability and Geographic Distribution of Lassa Virus, Sierra Leone
Table 2
Results of Lassa virus detection among rodent samples with >1 positive test result, Sierra Leone*
Sample | Date collected | Collection site |
PCR† |
RPM‡ | ||||
---|---|---|---|---|---|---|---|---|
Village/town | District | NP | GPC | L | ||||
LM0034 | 2009 Jan 27 | Bumpeh | Kenema | + | + | + | Neg | |
LM0036 | 2009 Jan 27 | Bumpeh | Kenema | + | + | + | NT | |
LM0047 | 2009 Jan 28 | Bumpeh | Kenema | + | + | Neg | NT | |
LM0054 | 2009 Jan 28 | Bumpeh | Kenema | + | + | + | NT | |
LM0058 | 2009 Jan 29 | Bumpeh | Kenema | + | + | + | Neg | |
LM0064 | 2009 Jan 30 | Bumpeh | Kenema | + | + | + | NT | |
LM0068 | 2009 Jan 30 | Bumpeh | Kenema | + | + | Neg | Neg | |
LM0087 | 2009 Feb 3 | Largo | Kenema | + | Neg | Neg | NT | |
LM0091 | 2009 Feb 3 | Largo | Kenema | + | + | + | + | |
LM0092 | 2009 Feb 3 | Largo | Kenema | + | + | + | NT | |
LM0093 | 2009 Feb 3 | Largo | Kenema | + | + | + | NT | |
LM0111 | 2009 Feb 4 | Largo | Kenema | + | + | + | NT | |
LM0122 | 2009 Feb 5 | Largo | Kenema | + | + | + | NT | |
LM0123 | 2009 Feb 5 | Largo | Kenema | + | + | + | NT | |
LM0124 | 2009 Feb 5 | Largo | Kenema | + | + | + | NT | |
LM0224 | 2009 Feb 18 | Koi | Kenema | + | + | + | NT | |
LM0250 | 2009 Feb 19 | Koi | Kenema | + | + | + | NT | |
LM0273 | 2009 Feb 20 | Koi | Kenema | + | + | + | NT | |
LM0395 | 2009 Jul 22 | Ngiehun | Kenema | + | + | + | + | |
LM0396 | 2009 Jul 22 | Ngiehun | Kenema | + | Neg | + | + | |
LM0434 | 2009 Jul 23 | Ngiehun | Kenema | + | + | + | + | |
LM0473 | 2009 Jul 24 | Ngiehun | Kenema | + | + | + | NT | |
LM0513 | 2009 Aug 1 | Saama | Kenema | + | Neg | Neg | NT | |
LM0582 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0591 | 2009 Aug 8 | Barlie | Bo | Neg | Neg | Neg | + | |
LM0610 | 2009 Aug 8 | Barlie | Bo | + | + | + | + | |
LM0619 | 2009 Aug 8 | Barlie | Bo | + | Neg | + | NT | |
LM0645 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0649 | 2009 Aug 8 | Barlie | Bo | Neg | Neg | Neg | + | |
LM0657 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0660 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0661 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0676 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0677 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0678 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0680 | 2009 Aug 8 | Barlie | Bo | + | + | + | NT | |
LM0714 | 2009 Aug 14 | Yawei | Kenema | + | + | Neg | NT | |
LM0716 | 2009 Aug 14 | Yawei | Kenema | + | + | + | + | |
LM0729 | 2009 Aug 15 | Yawei | Kenema | + | Neg | Neg | + | |
Z0005 | 2009 Dec 17 | Taiama | Kenema | + | + | + | NT | |
Z0007 | 2009 Dec 17 | Taiama | Kenema | + | + | + | NT |
*GPC, glycoprotein precursor; L, polymerase; Neg, negative; NP, nucleoprotein; NT, sample not tested; RPM, resequencing pathogen microarray; +, positive.
†Results of PCR detection using appropriate diagnostic primers.
‡Results of RPM-TEI detection of LASV.
1These authors contributed equally to this article.