Volume 27, Number 1—January 2021
Research
Comparative Omics Analysis of Historic and Recent Isolates of Bordetella pertussis and Effects of Genome Rearrangements on Evolution
Table 3
Gene in Tohama I | Gene group | Gene name | Transcriptome |
Proteome |
Secretome |
Annotation | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Cz/Toh | VS/Toh | Cz/Toh | VS/Toh | Cz/Toh | VS/Toh | ||||||
toh_00485 | Group_1902 | BP0500 | 2.1 | 2.8 | 1.5 | 1.3 | 6.0 | 5.1 | T3SS effector BopC | ||
toh_00936 | Sbp | BP0966 | 14.7 | 13.0 | 5.6 | 4.6 | ND | ND | Sulfate-binding protein | ||
toh_02200 | bscI | BP2249 | 2.1 | 3.1 | 1.2 | ND | 2.8 | 6.2 | T3SS protein BscI | ||
toh_02203 | bopB | BP2252 | 2.1 | 3.0 | 3.1 | 2.8 | 2.1 | 1.8 | T3SS protein BopB | ||
toh_02204 | bopD | BP2253 | 1.8 | 2.5 | 2.0 | 1.5 | 3.7 | 2.3 | T3SS protein BopD | ||
toh_02205 | bcrH1 | BP2254 | 2.3 | 4.0 | 2.5 | 2.1 | 1.6 | 3.1 | T3SS protein | ||
toh_02206 | Group_1710 | BP2255 | 2.4 | 3.8 | 3.9 | 4.0 | 4.8 | 1.7 | Hypothetical protein | ||
toh_02207 | bsp22 | BP2256 | 2.4 | 3.6 | 1.6 | 1.5 | 3.6 | 1.8 | T3SS protein Bsp22 | ||
toh_02208 | bopN | BP2257 | 2.5 | 2.9 | 1.3 | 1.0 | 3.1 | 1.5 | T3SS protein BopN | ||
toh_02210 | Group_2630 | BP2259 | 2.0 | 2.4 | 1.4 | 1.9 | 5.1 | 2.4 | Putative T3SS protein | ||
toh_02214 | bscE | BP2263 | 2.3 | 1.5 | 5.2 | 4.5 | 2.0 | 2.3 | T3SS protein BscE | ||
toh_03375 | Group_1130 | BP3434 | 6.1 | 4.4 | 3.3 | 1.9 | 2.6 | 1.8 | Exported protein |
*Fold change values resulting from comparison of either recent isolates (Cz) or historic strains (VS) with Tohama I strain (Toh) are shown for RNA sequencing and proteomic analyses. Values that did not indicate statistical significance (FC>2; adjusted p<0.05) are shown in bold. ND, not determined; toh, Tohama.
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Page updated: December 21, 2020
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